[phenixbb] Fwd: real_space_refine

Pavel Afonine pafonine at lbl.gov
Sat Aug 2 08:34:53 PDT 2014


Hi George,

On 7/30/14, 9:28 AM, George Devaniranjan wrote:
> *I am confused by omega_esd_override_value *
> *
> *
> *What is it supposed to do?
> *

sources/cctbx_project % libtbx.find_files -g omega_esd_override_value
./mmtbx/monomer_library/pdb_interpretation.py: omega_esd_override_value 
= None
./mmtbx/monomer_library/pdb_interpretation.py:             if 
(peptide_link_params.omega_esd_override_value is not None):
./mmtbx/monomer_library/pdb_interpretation.py:               assert 
peptide_link_params.omega_esd_override_value > 0
./mmtbx/monomer_library/pdb_interpretation.py: proxy.weight = 
1/peptide_link_params.omega_esd_override_value**2

Hopefully this makes it clearer.
Pavel

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