[phenixbb] how to remove hydrogen from pdb

[Tim Gruene]

Dear AFSHAN,

the simple and qucik command

egrep  -v "^ATOM|HETATM.*H$" your.pdb > your_noH.pdb

should also work.

Best,
 Tim

On 02/06/2014 06:12 PM, Afshan Begum wrote:
> 
> 
>  Dear Experts,
> 
> Could you kindly tell me how can i remove hydrogen from my coordinate. Actually i refine my structure with phenix along all hydrogen now its almost done but before submitting the molecule into PDB data bank i want to remove hydrogen from the coordinate which i do not know how to do,  suggestion would be appreciated
> 
> 
> Best Regards
> 
> AFSHAN
> 
> ===========================================
> Dr. Afshan Begum 
> 
> 
> 
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> 

-- 
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

GPG Key ID = A46BEE1A

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