[phenixbb] MR

Oganesyan, Vaheh OganesyanV at medimmune.com
Fri Jan 17 08:09:47 PST 2014


I think in such cases you can use *.sol file generated during firs run. Would be interested to know if it not the case.

Regards,

Vaheh
8-5851


-----Original Message-----
From: phenixbb-bounces at phenix-online.org [mailto:phenixbb-bounces at phenix-online.org] On Behalf Of Pavel Afonine
Sent: Friday, January 17, 2014 11:04 AM
To: PHENIX user mailing list
Subject: Re: [phenixbb] MR

Hi Randy,

this reminded me I had a similar question... What if I have PDB file with a partial model (that is not a "partial solution form previous
job") and I want to use Phaser to find the rest?

Thanks,
Pavel

On 1/17/14, 5:11 AM, Randy Read wrote:
> Dear Swastik
>
> If you have a partial MR solution using the Phaser-MR GUI, then you can choose it with the "Use partial solution from previous job" pull-down, and set up a job to add more copies to it.
>
> Best wishes,
>
> Randy Read
>
> On 17 Jan 2014, at 12:41, Swastik Phulera <swastik.phulera at gmail.com> wrote:
>
>> Dear All,
>> I am trying an MR, it looks like there would be 16 dimers in the asymmetric unit, Upon running Phaser once it could easily fit two copies.  I now wish to use this solution to perform further MR runs in order to locate the other dimers.
>> I was just wondering what shall be the right way to go about it.
>> Regards
>> Swastik
>> _______________________________________________
>> phenixbb mailing list
>> phenixbb at phenix-online.org
>> http://phenix-online.org/mailman/listinfo/phenixbb
> ------
> Randy J. Read
> Department of Haematology, University of Cambridge
> Cambridge Institute for Medical Research      Tel: + 44 1223 336500
> Wellcome Trust/MRC Building                   Fax: + 44 1223 336827
> Hills Road                                    E-mail: rjr27 at cam.ac.uk
> Cambridge CB2 0XY, U.K.                       www-structmed.cimr.cam.ac.uk
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb

_______________________________________________
phenixbb mailing list
phenixbb at phenix-online.org
http://phenix-online.org/mailman/listinfo/phenixbb
To the extent this electronic communication or any of its attachments contain information that is not in the public domain, such information is considered by MedImmune to be confidential and proprietary. This communication is expected to be read and/or used only by the individual(s) for whom it is intended. If you have received this electronic communication in error, please reply to the sender advising of the error in transmission and delete the original message and any accompanying documents from your system immediately, without copying, reviewing or otherwise using them for any purpose. Thank you for your cooperation.


More information about the phenixbb mailing list