[phenixbb] exporting results, reduce
yoyoq at yahoo.com
Fri Jan 24 08:44:01 PST 2014
replying for the sake of posterity.
the slow export/reduce seems to be related to a malformed input model.
the segids are ok but there are some different segids that have the same chain.
setting the chain to empty for everything resolved the issue.
Using the malformed chain model took 35 hours (if it finished).
Using the no chain model took 5 hours.
From: jp d <yoyoq at yahoo.com>
To: PHENIX user mailing list <phenixbb at phenix-online.org>
Sent: Friday, January 17, 2014 9:53 AM
Subject: [phenixbb] exporting results, reduce
we have a large complex at low resolution (7A) and just want
to see general conformational changes. Occasionally phenix
gets stuck at 'Exporting Results' and top shows 'reduce' running
and using lots of RAM . so much RAM that it starts using swap.
is there a way to bypass or limit the reduce step.
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