[phenixbb] Run PHENIX commands on GUI verison?

R.D. Oeffner rdo20 at cam.ac.uk
Mon Jun 9 12:45:29 PDT 2014

I usually have a shortcut on my windows Desktop that targets
C:\Windows\System32\cmd.exe /k 

 From that command prompt you then have all the phenix command line tools 


On 2014-06-09 19:17, Nathaniel Echols wrote:
> On Sat, Jun 7, 2014 at 10:24 PM, 李翔 <lixiang1642 at gmail.com> wrote:
>> I currently can only access to PHENIX with my laptop which has a
>> Windows system (GUI). I want to run some commands for generating
>> restraints for my models such as:
>> iotbx.show_distances MR.1.pdb > contacts.distances,
>> phenix.secondary_structure_restraints model.pdb
>> Is there a way I can run commands in GUI version or can I run the
>> above commands in the GUI version?
> Yes, I think you need to run a command like this:
> C:PHENIX-1.9-1692Phenix-1.9-1692_buildsetpaths.bat
> which will add the path to all of the command-line executables.  This
> is only partially supported, however - I can't guarantee that all of
> the commands will actually work on Windows.
> -Nat
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