[phenixbb] coot -> fetch pdb & map using EDS

Dale Tronrud detBB at daletronrud.com
Tue Jun 17 08:44:29 PDT 2014

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   I have found that contacting the authors often works, and sometimes
you can get them to deposit the structure factors and help everyone
out.  The PDB is quite happy to accept structure factors for models
deposited years ago.

Dale Tronrud

On 6/17/2014 8:31 AM, Murpholino Peligro wrote:
> fmp at eva02:~$ phenix.fetch_pdb --maps 1JWR Model saved to
> /home/fmp/1JWR.pdb Sequence saved to /home/fmp/1JWR.fa Sorry:
> Couldn't download structure factors for 1jwr.
> It is because the structure factors are not available in the PDB.
> So this means that there is no way to get them...right?
> (well...maybe I could contact the authors...but the structure is
> more than ten  years old...)
> 2014-06-17 10:04 GMT-05:00 Nathaniel Echols <nechols at lbl.gov 
> <mailto:nechols at lbl.gov>>:
> On Tue, Jun 17, 2014 at 6:53 AM, Murpholino Peligro 
> <murpholinox at gmail.com <mailto:murpholinox at gmail.com>> wrote:
> How to proceed when Coot -> File -> Fetch PDB and Map using EDS 
> does not work?
> phenix.fetch_pdb --maps ID
> then load the file "ID_maps.mtz" using the auto-open function in
> Coot.
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> list phenixbb at phenix-online.org 
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