[phenixbb] molprobity coot TODO python script

wtempel wtempel at gmail.com
Thu Jun 19 12:50:30 PDT 2014

I noticed the following when loading a phenix-created python TODO script
using the 4730 and 5100 Linux-x86_64-ubuntu-12.04.3-python-gtk2 coot builds.
A "MolProbity to-do list" window opens. GUI functions such as "Show Probe
dots" and "Overlap only" are working as expected. Clicking anywhere within
the "C-beta outliers" or "Severe clashes" areas of the window moves the
display center to problem areas of the structure.
no text is visible in any of the columns ("Chain", "Residue", "Name", etc.
of the "C-beta outliers area"; "Atom 1", Atom 2", "Overlap" of the "Severe
clashes"). As a result, I cannot select a specific problem spot for
Any ideas?
Another molprobity related question: us there a phenix script that produces
a list of NQH flip candidates?
Thank you,
Wolfram Tempel

Attached image:
Clicking in the white areas on the window in the attached screen grab will
move the center of the coot display, but labels for the problem areas are
not shown in the window's columns.
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