[phenixbb] select sphere syntax
Nigel Moriarty
nwmoriarty at lbl.gov
Fri Jun 27 10:45:31 PDT 2014
John
Here is the atom selection page
http://www.phenix-online.org/documentation/reference/atom_selections.html
and here is an example.
within(5, (nucleotide or peptide) backbone)
Contact me if you have any more trouble.
Cheers
Nigel
On Fri, Jun 27, 2014 at 6:03 AM, Tanner, John J. <TannerJJ at missouri.edu>
wrote:
> Is there a way to select a sphere of residues in
> the phenix.superpose_pdbs command, analogous to the "around" syntax in cns?
> I tried "within" and "around" in phenix.superpose_pdbs but got "Atom
> selection syntax error".
>
> Thanks.
>
> Jack Tanner
>
>
>
>
> John J. Tanner
> Professor of Biochemistry and Chemistry
> University of Missouri-Columbia
> 125 Chemistry Building
> Columbia, MO 65211
> email: tannerjj at missouri.edu
> phone: 573-884-1280
> fax: 573-882-2754
> http://faculty.missouri.edu/~tannerjj/tannergroup/tanner.html
>
>
>
>
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>
--
Nigel W. Moriarty
Building 64R0246B, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709 Email : NWMoriarty at LBL.gov
Fax : 510-486-5909 Web : CCI.LBL.gov
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