[phenixbb] select sphere syntax

[Nigel Moriarty]

John

Here is the atom selection page

http://www.phenix-online.org/documentation/reference/atom_selections.html

and here is an example.

within(5, (nucleotide or peptide) backbone)


Contact me if you have any more trouble.

Cheers

Nigel

On Fri, Jun 27, 2014 at 6:03 AM, Tanner, John J. <TannerJJ at missouri.edu>
wrote:

>  Is there a way to select a sphere of residues in
> the phenix.superpose_pdbs command, analogous to the "around" syntax in cns?
>   I tried "within" and "around" in phenix.superpose_pdbs but got "Atom
> selection syntax error".
>
>  Thanks.
>
>  Jack Tanner
>
>
>
>
>  John J. Tanner
> Professor of Biochemistry and Chemistry
> University of Missouri-Columbia
> 125 Chemistry Building
> Columbia, MO  65211
> email: tannerjj at missouri.edu
> phone: 573-884-1280
> fax: 573-882-2754
> http://faculty.missouri.edu/~tannerjj/tannergroup/tanner.html
>
>
>
>
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>
>


-- 
Nigel W. Moriarty
Building 64R0246B, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov
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