[phenixbb] select sphere syntax

Nathaniel Echols nechols at lbl.gov
Sat Jun 28 07:53:47 PDT 2014

On Fri, Jun 27, 2014 at 10:45 AM, Nigel Moriarty <nwmoriarty at lbl.gov> wrote:

> Here is the atom selection page
> http://www.phenix-online.org/documentation/reference/atom_selections.html
> and here is an example.
> within(5, (nucleotide or peptide) backbone)
That won't work in phenix.superpose_pdbs (or the atom selection tool in the
GUI) because the "within" syntax depends on the full geometry restraints
setup (which is slower and therefore not used in these contexts).   This
has been annoying me for a while, so I will look into changing it.

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