[phenixbb] phenix error

Pavel Afonine pafonine at lbl.gov
Tue Mar 4 07:18:46 PST 2014


Hello,

this probably means that
"name O and chain W and resname HOH and resseq 69"
selects no atoms.
Can you send a copy of ATOM records from PDB file that you want to 
select with the above selection string?

Pavel

On 3/3/14, 10:31 PM, SD Y wrote:
> Hi,
>
> Could you please tell me why am I getting this error " No atom 
> selected: "name O and chain W and resname HOH and resseq 69".
>
> Log file ends as follows:
>
> ============================= Scattering factors 
> =============================
>
>
>                 ----------X-ray scattering dictionary----------
>
> Number of scattering types: 7
>   Type  Number    sf(0)   Gaussians
>    Zn2+     1     27.88       1
>    S       10     15.96       2
>    P        2     14.95       2
>    Mg2+     3      9.96       1
>    O      635      7.97       2
>    N      523      6.97       2
>    C     1983      5.97       2
>   sf(0) = scattering factor at diffraction angle 0.
>
>
> ========================== Anomalous scatterer groups 
> =========================
>
> All atoms refined with f_prime=0 and f_double_prime=0.
>
> ======================== Summary of geometry restraints 
> =======================
>
>   Number of disulfides: simple=0, symmetry=0
>   Custom bonds:
> Sorry
> ------------------------------
>
> Thanks a lot
> SDY
>
>
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