[phenixbb] Rosetta compile problem

Paul Adams pdadams at lbl.gov
Thu Nov 13 00:12:44 PST 2014


This suggests that you don't have an appropriate compiler installed or in your path:

> sh: g++-4.2: command not found

You probably need to install XCode to allow for compilation.


> On Nov 12, 2014, at 11:02 PM, miyatake <miyatake at riken.jp> wrote:
> 
> Dear all,
> 
> I tried to compile Rosetta for rosetta_refinement, on Mac OX10.10.
> 
> I run " /rosetta_2014.22.56873_bundle/main/source] user% sudo scons.py 
> 
> But it was in failure, showing the following message:
> 
> 
> 
> g++-4.2 -o build/external/debug/macos/14.0/64/x86/gcc/4.2/default/dbio/cppdb/atomic_counter.os -c -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -m64 -march=nocona -mtune=generic -O0 -g -ggdb -ffloat-store -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_SUFFIX=\".dylib\" -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_DISABLE_SHARED_OBJECT_LOADING -DCPPDB_DISABLE_THREAD_SAFETY -DCPPDB_SOVERSION=\"0\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -Ibuild/external/debug/macos/14.0/64/x86/gcc/4.2/default/dbio/sqlite3 -Iexternal/dbio/sqlite3 -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include external/dbio/cppdb/atomic_counter.cpp
> sh: g++-4.2: command not found
> scons: *** [build/external/debug/macos/14.0/64/x86/gcc/4.2/default/dbio/cppdb/atomic_counter.os] Error 127
> scons: building terminated because of errors.
> 
> 
> 
> 
> How can I resolve that?
> 
> Best regards,
> 
>     H. Miyatake
> 
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-- 
Paul Adams
Deputy Division Director, Physical Biosciences Division, Lawrence Berkeley Lab
Division Deputy for Biosciences, Advanced Light Source, Lawrence Berkeley Lab
Adjunct Professor, Department of Bioengineering, U.C. Berkeley
Vice President for Technology, the Joint BioEnergy Institute
Laboratory Research Manager, ENIGMA Science Focus Area

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