[phenixbb] MRage against local "select" PDB database on commandline

Kaushik Hatti hskaushik at gmail.com
Sun Nov 16 23:47:03 PST 2014


I am new to Phenix.  Sorry if my question is naive.

For a given mtz file, I want to pick templates from a local PDB database
(its actually iTasser template library) and perform Molecular Replacement
using MRage.  I have already installed Blast, downloaded iTasser PDB
library (http://zhanglab.ccmb.med.umich.edu/library/PDB.tar.bz2) and
extracted sequences from both the downloaded PDB template library set and
target protein for which mtz is available.

How should I go about building pipeline to perform MR using templates from
locally downloaded select PDB database?

Are there any more parameters available for parameter name: services under
scop: search other than "local" and "ncbi"?

Thanks in advance,
People living deeply have no fear of death - Anais Nin
Caution: I am still the dumbest person I have ever known :-)
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