[phenixbb] Calculate average B-factor?

[Tim Gruene]

Hi all,

reading this beauty I would like to ask a question to the respective
developers:
Will the PDB format remain the working format for the users and only
upon deposition will it be converted to PDBml for archiving purposes, or
are the refinement programs (et al.) going to abandon PDB, too?

Best,
Tim

On 10/04/2014 10:32 PM, Ed Pozharski wrote:
> grep "^ATOM  " filename.pdb | cut -c 61-66 | awk '{s+=$1;} END {print s/NR;}'
> 
> "Nobody likes a show off, Private"
>                                            Skipper
> 
> Cheers
> 
> 
> Sent on a Sprint Samsung Galaxy S® III
> 
> <div>-------- Original message --------</div><div>From: Chen Zhao <c.zhao at yale.edu> </div><div>Date:10/04/2014  4:03 PM  (GMT-05:00) </div><div>To: PHENIX user mailing list <phenixbb at phenix-online.org> </div><div>Subject: [phenixbb] Calculate average B-factor? </div><div>
> </div>Dear all,
> 
> I am just wondering whether there is a command line tool in phenix that calculates the average B-factor of a PDB file? Can it deal with the ANISOU records (from TLS refinement or not) properly? I looked into previous posts but the  --show-adp-statistics option in phenix.pdbtools seems to be no longer available in the version (1.9-1678) I installed.
> 
> Thank you so much,
> Chen
> 
> 
> 
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb
> 

-- 
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

GPG Key ID = A46BEE1A

-------------- next part --------------
A non-text attachment was scrubbed...
Name: signature.asc
Type: application/pgp-signature
Size: 173 bytes
Desc: OpenPGP digital signature
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20141005/0db79ea3/attachment.sig>