[phenixbb] refinement for non-standard DNA base

[John Cheong]

Hi,

I have 5-fluoro-Uracil in my DNA:protein complex.
I modeled 5-F-dU into the map, ran eLBOW for geometry file and did
refinement.
After the refinement, 5-F-dU is not connected to the neighboring
nucleotides and the phosphate oxygens are rotated to wrong positions.

Can anyone teach me how to refine with non-standard DNA base ?

Any help or advice would be appreciated.

John
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