[phenixbb] On Phenix refinement

Smith Liu smith_liu123 at 163.com
Fri Feb 20 02:56:28 PST 2015

Dear All,

The default number of cycles for the Phenix refinement graphical interface is 3 (should be macro-cycles). I have done a refinement with 3 default cycles, and I get the acceptable refinement results. Then I kept everything same, except I changed the cycles of refinement from 3 to 5, however the refinement result was ugly which was unacceptable (Rfree increased).
The Phenix document regards 5 macrocycles refine is fine. For my situation, do you think the 3 macrocycles refine result is acceptable or not? If not acceptable, what do you suggest for improvement?

I am looking forward to getting your reply.


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