[phenixbb] problems with rosetta
Terwilliger, Thomas Charles
terwilliger at lanl.gov
Thu Jul 9 06:04:49 PDT 2015
I'm sorry for the trouble! First, I need to note that running phenix.mr_rosetta is different than running phenix.rosetta_refine and they have different instructions for installation of Rosetta and use different paths. As you are using phenix.mr_rosetta, can you possibly try going through the instructions at
It is also necessary to have a recent version of Phenix for this all to work with current Rosetta versions, so you might want to download a nightly build of Phenix too.
Let me know if that does not help!
All the best,
From: phenixbb-bounces at phenix-online.org [phenixbb-bounces at phenix-online.org] on behalf of Benny Belviso [Benny.Belviso at nottingham.ac.uk]
Sent: Thursday, July 09, 2015 5:59 AM
To: phenixbb at phenix-online.org
Subject: [phenixbb] problems with rosetta
I am trying to use rosetta with the Phenix Gui (Phenix is installed on Debian). I have downloaded the tar.gz file named "rosetta_bin_linux_2015.25.57927_bundle" that contains source and binary files.
Becouse the tar.gz contains pre-compiled files, I have not compiled rosetta again (however, I have the same problems also in the case of tar.gz containing source after the compilation).
According to the instructions showed on
I have setup my environmental variables in .bashrc as:
However, by opening MR-Rosetta on Phenix GUI, I get a first warning message that says me that rosetta directory seems to be not correct. By running rosetta, the program says that it is not able to find PHENIX_ROSETTA_PATH.
I have tried to change the path also in the "Directory setup" by typing
/home/bbdanilo/program/rosetta_bin_linux_2015.25.57927_bundle as directory for rosetta path
/main/source/bin as Rosetta binary directory name
mr_protocols.linuxgccrelease as binary of rosetta
In this case, the program says that does not find the binary for rosetta (it requires mr_rosetta.default, instead I should use mr_protocols.linuxgccrelease).
What am I doing wrong?
Any help is welcome.
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