[phenixbb] Problems running phenix.rosetta_refine
etienne.rebuffet at inserm.fr
Wed Jun 3 00:08:07 PDT 2015
I get the same error message as Thomas and I would appreciate any help
about this issue. I am currently running :
Le 28/05/2015 20:59, Klose, Thomas a écrit :
> Dear all,
> I was trying to set up phenix.rosetta_refine to test it for the refinement of a 4.5Å structure. I installed the latest phenix release and compiled the latest rosetta version (2015.19) using rosetta.build_phenix_interface. However, when I try to run phenix.rosetta_refine I get the following error message:
> Generating 5 models on 4 processors...
> DEBUG dumping error message
> ERROR: Rosetta exited with status 1
> stderr output:
> Wrong map type requested: %%map_type%%
> Allowed format is: [p][m]Fo+[q][D]Fc[kick][filled]
> where [p] and [q] are any numbers (optional),
> [m] and [D] indicate if the requested map is sigmaa (optional),
> Fo and Fc are Fobs and Fcalc,
> [kick] is for Average Kick Map (optional),
> [filled] is for missing Fobs filled map.
> Examples: 2mFo-DFc, 3.2Fo-2.3Fc, mFobs-DFcalc_kick, 2mFobs-DFcalc_filled, Fc,
> 2mFobs-DFcalc_kick_fill, anom, anom_diff, anomalous_difference, Fo
> ERROR: PhenixInterface::calculateDensityMap() : error writing map
> ERROR:: Exit from: src/core/scoring/cryst/PhenixInterface.cc line: 1122
> This happens with our actual data as well as test data that I downloaded (PDB: 1yip).
> Any help in solving this problem would be greatly appreciated.
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