[phenixbb] C-beta RMSD

Pavel Afonine pafonine at lbl.gov
Fri Jun 26 10:07:47 PDT 2015


Hi Kaushik,

it is not off-topic. I'm not aware of such a tool in Phenix. We have all 
components in CCTBX to enable this kind of calculation but I afraid some 
one needs to spend a day or two to actually put them together into an 
end-user tool..

Pavel

> Hi,
>
> Is there a tool which can calculate C-beta RMSD for equivalent amino 
> acids of homologous structures, post C-alpha superposition?
>
> Sorry if its off topic,
> Thanks,
> Kaushik



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