[phenixbb] reference model restraints by segid

[Oleg Sobolev]

Hi,

If removing of TER indices won't work in dev-2056, I will be happy to
investigate and find a way to make it work for everybody. To do so I will
need the inputs you are using (i.e. models and parameter files)

Best regards,
Oleg Sobolev.

On Thu, May 28, 2015 at 2:10 PM, Nigel Moriarty <nwmoriarty at lbl.gov> wrote:

> The error says it doesn't like the TER cards. Remove them all and retry.
>
> Cheers
>
> Nigel
>
> ---
> Nigel W. Moriarty
> Building 64R0246B, Physical Biosciences Division
> Lawrence Berkeley National Laboratory
> Berkeley, CA 94720-8235
> Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
> Fax   : 510-486-5909       Web  : CCI.LBL.gov
>
> On Thu, May 28, 2015 at 1:29 PM, jp d <yoyoq at yahoo.com> wrote:
>
>> Hi,
>> I am having trouble getting phenix to used segid's in reference model
>> restraints when
>> my reference and target pdbs both don't use chain ID's.
>> phenix quits with this message:
>>
>> *** Adding Reference Model Restraints ***
>> Sorry: chain ' ' in /home/path/removed/agnref2.pdb contains one or more
>> errant TER cards.
>> Please remove and try again.
>>
>> my definition file looks like this:
>> refinement {
>>    main {
>>      reference_model_restraints = True
>>    }
>>    reference_model {
>>      file = two.pdb
>>    }
>> }
>>
>> refinement.reference_model.reference_group {
>>  reference = segid A16S
>>  selection = segid A16S
>> }
>> (above about 50 more times)
>>
>> this was on versions 1.9-1692 , dev-2016 and dev-2056
>>
>> any suggestions ?
>> thanks
>> jpd
>>
>>
>>
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>
>
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