[phenixbb] error when running phenix_rosetta_refine

Wei Wang ww2283 at columbia.edu
Thu Nov 19 11:08:05 PST 2015


Hi,

I just experienced an error when using phenix_rosetta_refine. It appeared
after "Generating 5 models". I'd appreciate any help on solving this.

Generating 5 models on 3 processors...


DEBUG dumping error message

ERROR: Rosetta exited with status 1

stderr output:

Traceback (most recent call last):

  File
"/Applications/phenix-1.10.1-2155/modules/phenix/phenix/rosetta/xray_target.py",
line 203, in compute_target

    tfx_r = self.target_functor(compute_gradients=compute_gradients)

  File
"/Applications/phenix-1.10.1-2155/modules/cctbx_project/mmtbx/refinement/targets.py",
line 247, in __call__

    compute_gradients=compute_gradients))

  File
"/Applications/phenix-1.10.1-2155/modules/cctbx_project/cctbx/xray/target_functors.py",
line 58, in __call__

    compute_gradients=compute_gradients)

RuntimeError: cctbx Internal Error:
/Users/builder/slave/phenix-nightly-mac-intel-osx-x86_64-10_9/modules/cctbx_project/cctbx/xray/targets.h(498):
CCTBX_ASSERT(f_calc.size() == f_obs.size()) failure.


ERROR: error computing X-ray target
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