[phenixbb] Using PyMOL-1.8 with PHENIX-dev-2306

acyang acyang0903 at gmail.com
Wed Feb 3 03:05:35 PST 2016

Hi everyone

I've installed pymol and phenix on my scientific linux7.1 workstation.
I can launch pymol via the launching script($PYMOL_HOME/pymol) normally.
But when I launched pymol in phenix GUI, I got some error as followed:
Traceback (most recent call last):
  File "/opt/PyMOL/modules/pymol/__init__.py", line 71, in <module>
    import pymol
  File "/opt/PyMOL/modules/pymol/__init__.py", line 521, in <module>
    import pymol._cmd
ImportError: /opt/PyMOL/modules/pymol/_cmd.so: undefined symbol:
After STFW*, *I knew the problem is about unicode variant (UCS2, UCS4).
I also checked the configuration of two python.
For /bin/python (adopted by pymol)

>>> import sys>>> print sys.maxunicode1114111

And for $PHENIX_HOME/base/bin/python (adopted by phenix)
>>> import sys
>>> print sys.maxunicode

My question is : How do I add the flag --enable-unicode=ucs4 in
configuring Python-2.7.8_cci.

I'd appreciate if any reply on this.

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