[phenixbb] "Use starting structure as reference" for homo-multimers

Pavel Afonine pafonine at lbl.gov
Tue Feb 9 08:00:59 PST 2016

Hi Tristan,

could you please send me the PDB file? I guess I can just try any 
multi-chain file but it would be good to use the one you have just in 
case there is something special about it..


On 2/9/16 07:55, Tristan Croll wrote:
> Hi,
> I've noticed that when I choose the option to use the starting 
> structure as a reference model and my structure is a homo-multimeric 
> protein, Phenix uses only the first chain as the reference for all 
> chains during refinement. Personally I'd much prefer it if instead it 
> ran a true 1:1 reference throughout the structure, since I tend to use 
> this for final very fine-scale refinement of structures where I've 
> already identified and modelled differences between NCS copies. 
> Others' mileage may vary, of course.
> Best regards,
> Tristan
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