[phenixbb] "Use starting structure as reference" for homo-multimers

Oleg Sobolev osobolev at lbl.gov
Wed Feb 10 09:51:22 PST 2016

Hi Tristan,

Thank you for pointing this out, I will change this behavior.
In the mean time, as a work-around, you can use the input file as reference
model file and specify reference groups by hand to achieve the desired

Best regards,
Oleg Sobolev.

On Tue, Feb 9, 2016 at 7:55 AM, Tristan Croll <tristan.croll at qut.edu.au>

> Hi,
> I've noticed that when I choose the option to use the starting structure
> as a reference model and my structure is a homo-multimeric protein, Phenix
> uses only the first chain as the reference for all chains during
> refinement. Personally I'd much prefer it if instead it ran a true 1:1
> reference throughout the structure, since I tend to use this for final very
> fine-scale refinement of structures where I've already identified and
> modelled differences between NCS copies. Others' mileage may vary, of
> course.
> Best regards,
> Tristan
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