[phenixbb] Rebuild fails in Rosetta-MR

Terwilliger, Thomas Charles terwilliger at lanl.gov
Mon Feb 22 09:58:49 PST 2016

Hi Rhys,
I'm sorry for the trouble!  This seems to be a Rosetta crash...first thing to try is a recent version of Rosetta.  If that still fails, then you can send me something that will fail and I will make a little test case that crashes quickly and send it to the Rosetta developers to fix.
All the best,
Tom T

On Feb 21, 2016, at 10:13 PM, Rhys Grinter wrote:

Dear all,

I'm currently trying to improve an model for a difficult MR problem using Rosetta-MR,

When the program gets to the Rebuild stage it fails with the following message:

Error message:

child process stderr output:

  command: 'sh  .../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/run_rebuild.sh"'

  .../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/run_rebuild.sh: line 5:  8996 Trace/BPT trap: 5       "/Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease" @"rebuild.flags" > "rebuild.log" 2>&1

Failed to run REBUILD

Sorry: Failed to run REBUILD...see log file in .../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/rebuild.log

Sorry: mr_rosetta failed...

Sorry routine failed

Please see log file for full error message

In the rebuild logfile:

dyld: lazy symbol binding failed: Symbol not found: ___sincos_stret
  Referenced from: /Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___sincos_stret
  Referenced from: /Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease
  Expected in: /usr/lib/libSystem.B.dylib

Has anyones experienced this error?



Dr Rhys Grinter
Sir Henry Wellcome Fellow
Monash University
+61 (0)3 9902 9213
+61 (0)403 896 767
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