[phenixbb] Rebuild fails in Rosetta-MR
Terwilliger, Thomas Charles
terwilliger at lanl.gov
Mon Feb 22 09:58:49 PST 2016
Hi Rhys,
I'm sorry for the trouble! This seems to be a Rosetta crash...first thing to try is a recent version of Rosetta. If that still fails, then you can send me something that will fail and I will make a little test case that crashes quickly and send it to the Rosetta developers to fix.
Thanks!
All the best,
Tom T
On Feb 21, 2016, at 10:13 PM, Rhys Grinter wrote:
Dear all,
I'm currently trying to improve an model for a difficult MR problem using Rosetta-MR,
When the program gets to the Rebuild stage it fails with the following message:
Error message:
child process stderr output:
command: 'sh .../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/run_rebuild.sh"'
.../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/run_rebuild.sh: line 5: 8996 Trace/BPT trap: 5 "/Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease" @"rebuild.flags" > "rebuild.log" 2>&1
Failed to run REBUILD
Sorry: Failed to run REBUILD...see log file in .../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/rebuild.log
Sorry: mr_rosetta failed...
Sorry routine failed
Please see log file for full error message
In the rebuild logfile:
dyld: lazy symbol binding failed: Symbol not found: ___sincos_stret
Referenced from: /Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___sincos_stret
Referenced from: /Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease
Expected in: /usr/lib/libSystem.B.dylib
Has anyones experienced this error?
Cheers,
Rhys
--
Dr Rhys Grinter
Sir Henry Wellcome Fellow
Monash University
+61 (0)3 9902 9213
+61 (0)403 896 767
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