[phenixbb] Command line version of Reflection_file _editor

Billy Poon bkpoon at lbl.gov
Mon Feb 29 15:45:54 PST 2016

Hi Rahel,

There is a command-line version, it's called iotbx.reflection_file_editor.
It's a bit complicated to use because you have to define filenames for each
input array. We recommend that you use the GUI.

If you want to batch process a bunch of reflection files, you might try
using the GUI first and looking at the .eff file that is generated to get a
sense of how to structure your parameters. To do so,

1) Set up your inputs in the GUI
2) In the menu bar, under "File", select "Save parameter file"

The saved parameter file will illustrate how the parameter names are set.

Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org

On Mon, Feb 29, 2016 at 3:12 PM, Rahel Woldeyes <raawold at gmail.com> wrote:

> Hi all,
> I was wondering if anyone has implemented command line compatible version
> of phenix.reflection_file_editor .
> Thanks!
> Rahel
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