[phenixbb] phenix fails to configure on fedora 20

abhisek Mondal abhisek.mndl at gmail.com
Tue Nov 1 10:07:23 PDT 2016


I'll try...
But, my concern is, when I tried to install the same version in my
workstation it worked cool.
Is this some sort of issue with my laptop ?
Nightly builds are beta right ? Won't it cause any stability issue ?

On Nov 1, 2016 3:07 PM, <rdo20 at cam.ac.uk> wrote:

> Have you tried one of the recent nightly builds or the centos5 version?
>
>
>
> Rob
>
>
>
> Sent from my Windows 10 phone
> --
> Robert Oeffner, Ph.D.
> Research Associate, The Read Group
> Department of Haematology,
> Cambridge Institute for Medical Research
> University of Cambridge
> Cambridge Biomedical Campus
> Wellcome Trust/MRC Building
> Hills Road
> Cambridge CB2 0XY
>
> www.cimr.cam.ac.uk/investigators/read/index.html
> tel: +44(0)1223 763234
> mobile: +44(0)7712 887162
>
>
>
> *From: *abhisek Mondal <abhisek.mndl at gmail.com>
> *Sent: *01 November 2016 07:39
> *To: *phenixbb at phenix-online.org
> *Subject: *[phenixbb] phenix fails to configure on fedora 20
>
>
>
> Hi,
>
> I'm using Fedora 20 on a 4 core laptop. When I tried to install phenix it
> gave following error.
>
>
>
> Same version installed fine in my workstation but keep failing here.
>
>
>
> Please help me out here.
>
> Thanks.
>
>
>
>
>
> *[root at viralhost
> phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6]# ./install *
>
>
>
> *
> ==========================================================================*
>
> *                          Phenix Installation*
>
>
>
> *                          version: 1.10.1-2155*
>
> *                     machine type: intel-linux-2.6*
>
> *                       OS version: 3.19.8-100.fc20.i686*
>
> *                      destination: /usr/local/phenix-1.10.1-2155*
>
> *                  # of processors: 4*
>
> *
> =========================================================================*
>
>
>
> *Configuring Phenix components...*
>
> *Traceback (most recent call last):*
>
> *  File "./bin/install.py", line 262, in <module>*
>
> *    installer(sys.argv[1:]).install()*
>
> *  File
> "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
> line 185, in install*
>
> *    self.install_from_binary()*
>
> *  File
> "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
> line 295, in install_from_binary*
>
> *    self.reconfigure(log=log)*
>
> *  File
> "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
> line 460, in reconfigure*
>
> *    call(args=args, log=log, verbose=self.options.verbose)*
>
> *  File
> "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/installer_utils.py",
> line 81, in call*
>
> *    raise RuntimeError("Call to '%s' failed with exit code %d" % (args,
> rc))*
>
> *RuntimeError: Call to '/usr/local/phenix-1.10.1-2155/base/bin/python
> /usr/local/phenix-1.10.1-2155/modules/cctbx_project/libtbx/configure.py
> --current_working_directory /usr/local/phenix-1.10.1-2155/build
> --command_version_suffix 1.10.1-2155 phenix phaser solve_resolve labelit'
> failed with exit code 126*
>
>
>
> --
>
> Abhisek Mondal
>
> *Research Fellow*
>
> *Structural Biology and Bioinformatics Division*
>
> *CSIR-Indian Institute of Chemical Biology*
>
> *Kolkata 700032*
>
> *INDIA*
>
>
>
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