[phenixbb] Crashing Phenix

[Reza Khayat]

Hi,


Typing locale generates:

LANG=en_US.UTF-8

...

LC_ALL=


Running

sudo locale-gen "en_US.UTF-8"

does not change anything


modifying /etc/environment to include

LC_ALL=en_US.UTF-8
LANG=en_US.UTF-8?

Then Running locale indicates that LC_ALL=en_US.UTF-8. However, the problem persists.


Reza



Reza Khayat, PhD
Assistant Professor
City College of New York
Department of Chemistry
New York, NY 10031
________________________________
From: Billy Poon <bkpoon at lbl.gov>
Sent: Tuesday, November 22, 2016 4:57 PM
To: Reza Khayat
Cc: phenixbb at phenix-online.org
Subject: Re: [phenixbb] Crashing Phenix

Hi Reza,

Do you have the LANG or LC_ALL environment variables set? If you have LANG can you try setting LC_ALL to the same value? Also, make sure that there is a "UTF-8" somewhere. So for English (U.S.), LC_ALL should be set to en_US.UTF-8.

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org

On Tue, Nov 22, 2016 at 3:38 PM, Reza Khayat <rkhayat at ccny.cuny.edu<mailto:rkhayat at ccny.cuny.edu>> wrote:

Hi,


I recently installed phenix-1.11.1-2575 (CentOS 5 flavor) and am getting the following crashes when trying to launch the GUI.

15:31:23: Cannot set locale to language "English".
15:31:23: locale 'en_GB' cannot be set.


phenix-1.10.1-2155 (on the same system) also gives me a locale 'en_GB' error but the GUI launches and I can run programs.


Any suggestions on how to fix this problem? Thanks.


Best wishes,
Reza

Reza Khayat, PhD
Assistant Professor
City College of New York
Department of Chemistry
New York, NY 10031
________________________________
From: phenixbb-bounces at phenix-online.org<mailto:phenixbb-bounces at phenix-online.org> <phenixbb-bounces at phenix-online.org<mailto:phenixbb-bounces at phenix-online.org>> on behalf of Pavel Afonine <pafonine at lbl.gov<mailto:pafonine at lbl.gov>>
Sent: Wednesday, August 3, 2016 7:39 AM
To: phenixbb at phenix-online.org<mailto:phenixbb at phenix-online.org>
Subject: Re: [phenixbb] Realspace refinement


Hi Reza,

yes, it does.

Pavel

On 8/1/16 04:16, Reza Khayat wrote:
Hi,

Does realspace refinement consider temperature factors during refinement? Thanks.

Best wishes,
Reza

Reza Khayat, PhD
Assistant Professor
Department of Chemistry
City College of New York
85 Saint Nicholas Terrace, CDI 2.318
New York, NY 10031
http://www.khayatlab.org/
212-650-6070<tel:212-650-6070>




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