[phenixbb] mrc to mtz conversion to open map in coot

[Paul Emsley]

Joshua,

You can coerce Coot to auto-open your mtz if you add to your 
~/.coot-preferences/phenix.py file:

set_auto_read_column_labels("F", "PHIF")

Paul.

On 03/08/17 20:57, Pavel Afonine wrote:
> Auto-open-MTZ is to load MTZ file assuming it contains Fourier map 
> coefficients with labels that Coot recognizes automatically as 
> appropriate map coefficients. In case of other labels (such as you get 
> from phenix.map_to_structure_factors) you need to use "Open MTZ,.." 
> and then specify what array you want to load.
>
> Now it helps to understand that mrc file contains actual real-space 
> map, not Fourier map coefficients. To load that map into Coot you need 
> to use "Open map".
>
> Pavel
>
> On 8/3/17 08:34, Joshua Jude Lobo wrote:
>> Hi Paul
>>
>> Thank you for your reply . I was using Auto-open-MTZ option in the 
>> drop-down for opening my map and it was failing to show up. However 
>> ,the Open MTZ option correctly read my MTZ file and displayed it.
>>
>> Thank you for your help . The python function to generate the 
>> histogram was very helpful .
>>
>> Sincerely
>> Joshua Lobo
>>
>> On Aug 2, 2017 13:59, "Paul Emsley" <pemsley at mrc-lmb.cam.ac.uk 
>> <mailto:pemsley at mrc-lmb.cam.ac.uk>> wrote:
>>
>>     On 02/08/17 19:57, Paul Emsley wrote:
>>
>>
>>         Calculate -> Scripting ->
>>
>>
>>     Calculate -> Scripting -> Python
>>
>>     :-/
>>
>>
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>
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