[phenixbb] protein atom selection

Nigel Moriarty nwmoriarty at lbl.gov
Fri Feb 3 12:01:20 PST 2017


I can understand your surprise. I believe it's because the Monomer Library
contradicts the Chemical Components and calls SAM an L-peptide. Can you
describe how you are selecting so I can debug easily.



Nigel W. Moriarty
Building 33R0349, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov

On Fri, Feb 3, 2017 at 11:42 AM, wtempel <wtempel at gmail.com> wrote:

> Hello all,
> in my hands and to my surprise, PHENIX atom selections such as "protein"
> or "peptide" would include a co-factor like SAM. Did others notice that
> also? Is this behavior what most users would want or even expect?
> Best regards.
> Wolfram Tempel
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