[phenixbb] Phenix installation on manjaro

Murpholino Peligro murpholinox at gmail.com
Mon Feb 6 16:33:15 PST 2017


Here is the output
http://pastebin.com/tEimEaF2

Thanks


2017-02-06 18:23 GMT-06:00 Billy Poon <bkpoon at lbl.gov>:

> Sorry, can you try running that command again, but in the
>
> /usr/local/phenix-dev-2666/build
>
> directory? The command needs to run in the same directory specified by the
> --current_working_directory flag.
>
> --
> Billy K. Poon
> Research Scientist, Molecular Biophysics and Integrated Bioimaging
> Lawrence Berkeley National Laboratory
> 1 Cyclotron Road, M/S 33R0345
> Berkeley, CA 94720
> Tel: (510) 486-5709
> Fax: (510) 486-5909
> Web: https://phenix-online.org
>
> On Mon, Feb 6, 2017 at 4:04 PM, Murpholino Peligro <murpholinox at gmail.com>
> wrote:
>
>> [eva03 phenix-installer-dev-2666-intel-linux-2.6-x86_64-centos5]#
>> /usr/local/phenix-dev-2666/base/bin/python /usr/local/phenix-dev-2666/mod
>> ules/cctbx_project/libtbx/configure.py --current_working_directory
>> /usr/local/phenix-dev-2666/build --command_version_suffix dev-2666
>> phenix phaser solve_resolve labelit dials xia2 iota prime
>> Traceback (most recent call last):
>>   File "/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py",
>> line 22, in <module>
>>     if not run():
>>   File "/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py",
>> line 17, in run
>>     libtbx.env_config.cold_start(sys.argv)
>>   File "/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/env_config.py",
>> line 2294, in cold_start
>>     " --current_working_directory %s" % show_string(build_path))
>> RuntimeError: Not equivalent to the current working directory:
>> --current_working_directory "/usr/local/phenix-dev-2666/build"
>>
>> I am trying the centos5 version. I'll try the centos6 ...
>>
>> 2017-02-03 15:39 GMT-06:00 Billy Poon <bkpoon at lbl.gov>:
>>
>>> Hi,
>>>
>>> Can you provide the output for
>>>
>>> '/usr/local/phenix-dev-2666/base/bin/python
>>> /usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py
>>> --current_working_directory /usr/local/phenix-dev-2666/build
>>> --command_version_suffix dev-2666 phenix phaser solve_resolve labelit dials
>>> xia2 iota prime'
>>>
>>> That is the command that is failing.
>>>
>>> Also, which installer are you using? The CentOS 6 installer is generally
>>> more compatible with more recent versions.
>>>
>>> --
>>> Billy K. Poon
>>> Research Scientist, Molecular Biophysics and Integrated Bioimaging
>>> Lawrence Berkeley National Laboratory
>>> 1 Cyclotron Road, M/S 33R0345
>>> Berkeley, CA 94720
>>> Tel: (510) 486-5709
>>> Fax: (510) 486-5909
>>> Web: https://phenix-online.org
>>>
>>> On Thu, Feb 2, 2017 at 2:02 PM, Murpholino Peligro <
>>> murpholinox at gmail.com> wrote:
>>>
>>>> Dear all.
>>>> has anyone been lucky with the installation of phenix in manjaro or any
>>>> other archlinux-based distribution?
>>>>
>>>> Thanks
>>>> Ps. Error looks like http://pastebin.com/WzwrbK8W
>>>>
>>>> _______________________________________________
>>>> phenixbb mailing list
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>>>>
>>>
>>>
>>
>
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