[phenixbb] Phenix installation on manjaro

[Murpholino Peligro]

I am very sorry .. I think I deleted the original pastebin links
here:
http://pastebin.com/cigkmmqF
http://pastebin.com/WHKMH9hx

2017-02-06 18:33 GMT-06:00 Murpholino Peligro <murpholinox at gmail.com>:

> Here is the output
> http://pastebin.com/tEimEaF2
>
> Thanks
>
>
> 2017-02-06 18:23 GMT-06:00 Billy Poon <bkpoon at lbl.gov>:
>
>> Sorry, can you try running that command again, but in the
>>
>> /usr/local/phenix-dev-2666/build
>>
>> directory? The command needs to run in the same directory specified by
>> the --current_working_directory flag.
>>
>> --
>> Billy K. Poon
>> Research Scientist, Molecular Biophysics and Integrated Bioimaging
>> Lawrence Berkeley National Laboratory
>> 1 Cyclotron Road, M/S 33R0345
>> Berkeley, CA 94720
>> Tel: (510) 486-5709
>> Fax: (510) 486-5909
>> Web: https://phenix-online.org
>>
>> On Mon, Feb 6, 2017 at 4:04 PM, Murpholino Peligro <murpholinox at gmail.com
>> > wrote:
>>
>>> [eva03 phenix-installer-dev-2666-intel-linux-2.6-x86_64-centos5]#
>>> /usr/local/phenix-dev-2666/base/bin/python
>>> /usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py
>>> --current_working_directory /usr/local/phenix-dev-2666/build
>>> --command_version_suffix dev-2666 phenix phaser solve_resolve labelit dials
>>> xia2 iota prime
>>> Traceback (most recent call last):
>>>   File "/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py",
>>> line 22, in <module>
>>>     if not run():
>>>   File "/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py",
>>> line 17, in run
>>>     libtbx.env_config.cold_start(sys.argv)
>>>   File "/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/env_config.py",
>>> line 2294, in cold_start
>>>     " --current_working_directory %s" % show_string(build_path))
>>> RuntimeError: Not equivalent to the current working directory:
>>> --current_working_directory "/usr/local/phenix-dev-2666/build"
>>>
>>> I am trying the centos5 version. I'll try the centos6 ...
>>>
>>> 2017-02-03 15:39 GMT-06:00 Billy Poon <bkpoon at lbl.gov>:
>>>
>>>> Hi,
>>>>
>>>> Can you provide the output for
>>>>
>>>> '/usr/local/phenix-dev-2666/base/bin/python
>>>> /usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py
>>>> --current_working_directory /usr/local/phenix-dev-2666/build
>>>> --command_version_suffix dev-2666 phenix phaser solve_resolve labelit dials
>>>> xia2 iota prime'
>>>>
>>>> That is the command that is failing.
>>>>
>>>> Also, which installer are you using? The CentOS 6 installer is
>>>> generally more compatible with more recent versions.
>>>>
>>>> --
>>>> Billy K. Poon
>>>> Research Scientist, Molecular Biophysics and Integrated Bioimaging
>>>> Lawrence Berkeley National Laboratory
>>>> 1 Cyclotron Road, M/S 33R0345
>>>> Berkeley, CA 94720
>>>> Tel: (510) 486-5709
>>>> Fax: (510) 486-5909
>>>> Web: https://phenix-online.org
>>>>
>>>> On Thu, Feb 2, 2017 at 2:02 PM, Murpholino Peligro <
>>>> murpholinox at gmail.com> wrote:
>>>>
>>>>> Dear all.
>>>>> has anyone been lucky with the installation of phenix in manjaro or
>>>>> any other archlinux-based distribution?
>>>>>
>>>>> Thanks
>>>>> Ps. Error looks like http://pastebin.com/WzwrbK8W
>>>>>
>>>>> _______________________________________________
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>>>>>
>>>>
>>>>
>>>
>>
>
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