[phenixbb] phenix.erraser and PHENIX_ROSETTA_PATH
Mooers, Blaine H.M. (HSC)
Blaine-Mooers at ouhsc.edu
Tue Mar 14 09:17:26 PDT 2017
This is a question about phenix.erraser.
I had it running in March 2016, but it no longer works.
I am using phenix-dev2686.
I am also using the rosetta_src_2016.59086_bundle that was released in November 2016.
Rosetta works fine for other tasks.
I set in my bashrc file the following: export PHENIX_ROSETTA_PATH=/Users/blaine-mooers/software/rosetta_src_2016.46.59086_bundle
If I use the gui or the command line, I get an error message that suggests using a relative path to the rosetta directory.
This does not work either.
I also tried extending the path incrementally down to the directory containing the erraser binaries.
There must be some other issue.
I suspect that between March and November 2016 that there has been reorganization of the directory hierarchy in rosetta.
There is no longer a "tools" subfolder in the top directory.
The file erraser_option.py is now located in ./rosetta_src_2016.46.59086_bundle/main/source/src/apps/public/ERRASER.
Blaine Mooers, Ph.D.
Department of Biochemistry and Molecular Biology, College of Medicine
University of Oklahoma Health Sciences Center
975 NE 10th Street, BRC 466
Oklahoma City, OK 73104-5419
Faculty webpage<http://www.oumedicine.com/department-of-biochemistry-and-molecular-biology/faculty/blaine-mooers-ph-d-> X-ray lab (LBSF)<http://http://research.ouhsc.edu/CoreFacilities/LaboratoryofBiomolecularStructureandFunction.aspx> Molecular Graphics<https://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/moleculargraphicslinks.html> Links <https://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/MolecularGraphicsLinks.html> Small Angle Scattering <http://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/small-angle-scattering-links-27aug2014.html?sfvrsn=0>
office: (405) 271-8300 lab: (405) 271-8313 e-mail: blaine-mooers at ouhsc.edu
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