[phenixbb] Error running phenix.rosetta_refine tests with Rosetta 3.8
nwmoriarty at lbl.gov
Tue Mar 21 09:35:47 PDT 2017
My Rosetta 3.7 is 2016.32. Not sure why we are different.
Nigel W. Moriarty
Building 33R0349, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709 Email : NWMoriarty at LBL.gov
Fax : 510-486-5909 Web : CCI.LBL.gov
On Tue, Mar 21, 2017 at 8:19 AM, Oliver Clarke <olibclarke at gmail.com> wrote:
> Hi Nigel,
> I tried with rosetta 3.7 (2016.46) and phenix dev-2719, and this time
> compilation using rosetta.build_phenix_interface was successful (scons
> finished building targets with no errors), but when I run rosetta.run_tests
> it still crashes, though with a different error (see attached log). Any
> ideas as to how to fix?
> On Mar 20, 2017, at 7:31 PM, Nigel Moriarty <nwmoriarty at lbl.gov> wrote:
> We are currently only supporting up to Rosetta 3.7 as a c++11 compiler is
> required for any subsequent versions. We have compiled using a c++11
> compiler with no problems so I suggest you revert to 3.7 or check the logs
> for compilation problems.
> Nigel W. Moriarty
> Building 33R0349, Molecular Biophysics and Integrated Bioimaging
> Lawrence Berkeley National Laboratory
> Berkeley, CA 94720-8235
> Phone : 510-486-5709 <(510)%20486-5709> Email : NWMoriarty at LBL.gov
> Fax : 510-486-5909 <(510)%20486-5909> Web : CCI.LBL.gov
> On Mon, Mar 20, 2017 at 9:34 AM, Oliver Clarke <olibclarke at gmail.com>
>> Phenix rosetta refinement worked with previous versions of rosetta and
>> phenix, but with the latest Rosetta version (3.8) and latest phenix nightly
>> I get a crash when running rosetta.run_tests after building the rosetta
>> phenix interface, which runs a test run of phenix.rosetta_refine. It gets
>> to the stage of generating initial models and then crashes - see attached
>> log. Ideas for a fix welcome!
>> phenixbb mailing list
>> phenixbb at phenix-online.org
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