[phenixbb] How to change the FOBS/SIGMA_FOBS value in phenix.refine

齐建勋 jxqi at im.ac.cn
Sun Jan 7 18:30:26 PST 2018

Dear PhenixBB,

Is there place to set the I/SIGMA_I or FOBS/SIGMA_FOBS values in phenix.refine? I found the default FOBS/SIGMA_FOBS threshold in phenix.refine is 1.35, which means any reflection lower than 1.35 will be excluded in the refinement process. This will generally result in a lower completeness range especially for the relatively weak datasets. When I uses the xray_data.remove_outliers=False, I got the error message "Sorry: Unknown command line parameter definition: remove_outliers = False", and my PHENIX version is phenix-1.12-2829, thanks.


Dr. Jianxun Qi
A321, Institute of Microbiology, Chinese Academy of Sciences
No.1 West Beichen Road, Chaoyang District
Beijing 100101, China
Email: jxqi at im.ac.cn
Tel : 86-10-64806182

More information about the phenixbb mailing list