[phenixbb] View Solvent Mask
Flath, Ben
bef206 at mail.usask.ca
Fri Mar 9 09:15:33 PST 2018
Now the important question
How can I modify the mask so it doesn't enter pockets within my model? Add HOH with occupancy set to zero and ignore_zero_occupancy_atoms=False?
Or is running polder maps more effective?
Thanks again
Ben
Sent from my Android
-------- Original message --------
From: Pavel Afonine <pafonine at lbl.gov>
Date: 2018-03-09 10:50 AM (GMT-06:00)
To: "Flath, Ben" <bef206 at mail.usask.ca>, phenixbb at phenix-online.org
Subject: Re: [phenixbb] View Solvent Mask
Hi Ben,
I was watching the YouTube tutorial on Polder Maps and noticed that the bulk solvent mask was visualized in coot. How can I visualize my bulk solvent mask?
phenix.mask model.pdb
will calculate the mask.
Pavel
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