[phenixbb] View Solvent Mask
Flath, Ben
bef206 at mail.usask.ca
Fri Mar 9 09:47:20 PST 2018
It seems I am looking for the the compute_box option in polder maps.
Ben
Sent from my Android
-------- Original message --------
From: "Flath, Ben" <bef206 at mail.usask.ca>
Date: 2018-03-09 11:15 AM (GMT-06:00)
To: Pavel Afonine <pafonine at lbl.gov>, "Flath, Ben" <bef206 at mail.usask.ca>, phenixbb at phenix-online.org
Subject: Re: [phenixbb] View Solvent Mask
Now the important question
How can I modify the mask so it doesn't enter pockets within my model? Add HOH with occupancy set to zero and ignore_zero_occupancy_atoms=False?
Or is running polder maps more effective?
Thanks again
Ben
Sent from my Android
-------- Original message --------
From: Pavel Afonine <pafonine at lbl.gov>
Date: 2018-03-09 10:50 AM (GMT-06:00)
To: "Flath, Ben" <bef206 at mail.usask.ca>, phenixbb at phenix-online.org
Subject: Re: [phenixbb] View Solvent Mask
Hi Ben,
I was watching the YouTube tutorial on Polder Maps and noticed that the bulk solvent mask was visualized in coot. How can I visualize my bulk solvent mask?
phenix.mask model.pdb
will calculate the mask.
Pavel
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20180309/0080e885/attachment.htm>
More information about the phenixbb
mailing list