[phenixbb] validation_cryoem

Oleg Sobolev osobolev at lbl.gov
Mon Apr 1 12:35:23 PDT 2019

Hi Daniel,

Unfortunately, there are no options available to enhance the
phenix.validation_cryoem command-line output at the moment. To get more
information on geometry in command-line, I would suggest to run separate
tools like

Some of them have options to change output, but by default they will report
full everything they found. GUI uses them under the hood, so you should get
the same results.

Best regards,
Oleg Sobolev.

On Mon, Apr 1, 2019 at 6:55 AM Daniel Larsson <daniel.larsson at icm.uu.se>

> Hi,
> When I use the phenix.validation_cryoem command line tool, I get very
> little data compared to when I run the Cryo-EM validation from the GUI.
> Which options should I enable to get things like detailed clash annoation,
> CaBLAM analysis etc?
> Regards,
> Daniel
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