[phenixbb] Fwd: running phenix.validation from command line

[Roberto Marabini]

Thanks you ;-)

On Tue, Apr 9, 2019 at 12:19 AM Billy Poon <BKPoon at lbl.gov> wrote:

> Hi Roberto,
>
> I checked in basic functionality so that adding "pickle=True" to the
> command line will dump the same results object that the GUI uses for
> displaying the data. The filename is currently hard-coded as
> "validation_cryoem.pkl" and that file will be overwritten without warning,
> but I'll be adding more functionality to make it more user friendly.
>
> The feature will be available in the next build that will be released this
> week.
>
> --
> Billy K. Poon
> Research Scientist, Molecular Biophysics and Integrated Bioimaging
> Lawrence Berkeley National Laboratory
> 1 Cyclotron Road, M/S 33R0345
> Berkeley, CA 94720
> Tel: (510) 486-5709
> Fax: (510) 486-5909
> Web: https://phenix-online.org
>
>
> On Mon, Apr 8, 2019 at 7:22 AM Roberto Marabini <roberto at cnb.csic.es>
> wrote:
>
>>
>> Hi,
>>
>>    I see that in phenix 1.14 (and 1.15) the command phenix.molprobity has
>> been replaced by the more general  phenix.validation_cryoem. In the old
>> version (1.13) phenix.molprobity, when executed with the
>> option pickle=True,  saved to the hard-disk a pkl file containing all data.
>>
>> Is there an equivalent flag for phenix.validation_cryoem? I asked this
>> question a  month ago and I understood from the answer that the option was
>> not available but that you plan to incorporate it.    Did you find time
>> modify phenix.validation_cryoem ?
>>
>>    thanks
>>
>>   Roberto
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