[phenixbb] Error very small nonbonded interaction distances.

[Pavel Afonine]

Dear Ahmad,

the error message means exactly what it says: the model contains 
perfectly overlapping atoms, many perfectly overlapping atoms. That 
isn't very realistic and requires your attention! My suggestion is: 
please have a closer look at the model and resolve the outstanding clashes.

Good luck!
Pavel

On 8/20/19 22:17, Ahmad Khalifa wrote:
> Hello,
>
> I attached the log file below.
>
> Best regards.
>
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