[phenixbb] rosetta installation problem

[Paul Adams]

I’ll also note that 1.14 is an older version of Phenix, it would be good to upgrade to the latest release (1.16).


> On Aug 28, 2019, at 8:36 AM, Nigel Moriarty <nwmoriarty at lbl.gov> wrote:
> 
> It seems that you are running the tests in a directory to which you do not have write access. Is that correct?
> 
> Cheers
> 
> Nigel
> 
> ---
> Nigel W. Moriarty
> Building 33R0349, Molecular Biophysics and Integrated Bioimaging
> Lawrence Berkeley National Laboratory
> Berkeley, CA 94720-8235
> Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
> Fax   : 510-486-5909       Web  : CCI.LBL.gov
> 
> 
> On Wed, Aug 28, 2019 at 3:06 AM Almudena Ponce Salvatierra <maps.farma at gmail.com> wrote:
> Dear all,
> 
> yesterday I spent quite some time trying to install Rosetta, so that I can use all it's modules within Phenix. 
> 
> However, when I am running the tests, rosetta stops and I get the following message (see below).
> 
> Any help would be much appreciated.
> 
> Thank you
> 
> Almudena
> 
> ======================= ROSETTA/PHENIX X-ray refinement =======================
> 
> Traceback (most recent call last):
>   File "/Applications/phenix-1.14-3260/build/../modules/phenix/phenix/command_line/rosetta_refine.py", line 307, in <module>
>     run(sys.argv[1:], create_dir=True)
>   File "/Applications/phenix-1.14-3260/build/../modules/phenix/phenix/command_line/rosetta_refine.py", line 159, in run
>     default_directory_number=params.output.directory_number)
>   File "/Applications/phenix-1.14-3260/modules/cctbx_project/libtbx/utils.py", line 1925, in create_run_directory
>     os.makedirs(dir_name)
>   File "/Applications/phenix-1.14-3260/base/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/../../../../../../../Python.framework/Versions/2.7/lib/python2.7/os.py", line 157, in makedirs
>     mkdir(name, mode)
> OSError: [Errno 13] Permission denied: 'rosetta_1'
> Almudenas-MacBook-Pro:bin almudenaponce$ 
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-- 
Paul Adams
Division Director, Molecular Biophysics & Integrated Bioimaging, Lawrence Berkeley Lab (http://biosciences.lbl.gov/divisions/mbib)
Division Deputy for Biosciences, Advanced Light Source, Lawrence Berkeley Lab (https://als.lbl.gov)
Adjunct Professor, Department of Bioengineering, U.C. Berkeley (http://bioeng.berkeley.edu)
Adjunct Professor, Comparative Biochemistry, U.C. Berkeley (http://compbiochem.berkeley.edu)
Vice President for Technology, the Joint BioEnergy Institute (http://www.jbei.org)
Laboratory Research Manager, ENIGMA Science Focus Area (http://enigma.lbl.gov)

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