[phenixbb] solved: error installation dev-1.14.3405 - 1.14.3409

[Guenter Fritz]

Hi Billy,

I figured out that argparse has not been part of python installed. 
Thanks for pointing me to python.
Problem is solved by installing argparse:
yum install python-argparse

Cheers, guenter
> Hi Guenter,
>
> What version of python do you use? The error is saying that the 
> "argparse" module is not available, but it should be available on the 
> default system python for CentOS 6 (python 2.6.x).
>
> --
> Billy K. Poon
> Research Scientist, Molecular Biophysics and Integrated Bioimaging
> Lawrence Berkeley National Laboratory
> 1 Cyclotron Road, M/S 33R0345
> Berkeley, CA 94720
> Tel: (510) 486-5709
> Fax: (510) 486-5909
> Web: https://phenix-online.org
>
>
> On Tue, Feb 12, 2019 at 7:17 AM Guenter Fritz 
> <guenter.fritz.phenix.ccp4 at gmail.com 
> <mailto:guenter.fritz.phenix.ccp4 at gmail.com>> wrote:
>
>     Dear phenix developers,
>
>     I get errors trying to install latest builds from 1.14.3405, 3406,
>     3409  64bit centos6 on Scientific Linux machines still running 6.6
>     (kernel 2.6.32).
>     1.14.3395 installed without any problem.
>
>     The downloaded file is OK.  1.14.3409 64bit centos6 installed on
>     Ubuntu 18.04 without any problem.
>
>     I also tried to install from source but got the same error output
>     (see below). I googeled some error outputs - looks like some
>     python error. Do I have to update finally?
>
>     Best regards,
>
>     Guenter
>
>
>     Output trying to install from source:
>
>     [guenter at msm68 phenix-installer-dev-3409-source]$ ./install
>     --prefix=/home/software/PHENIX/1.14.3409/ --nproc=10
>     Traceback (most recent call last):
>       File "./bin/install.py", line 20, in <module>
>         from libtbx.auto_build import install_distribution
>       File
>     "/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/install_distribution.py",
>     line 75, in <module>
>         from libtbx.auto_build import install_base_packages
>       File
>     "/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/install_base_packages.py",
>     line 28, in <module>
>         from .package_defs import *
>       File
>     "/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/package_defs.py",
>     line 18, in <module>
>         from .bootstrap import Toolbox
>       File
>     "/home/software/PHENIX/1.14.3409/phenix-installer-dev-3409-source/lib/libtbx/auto_build/bootstrap.py",
>     line 14, in <module>
>         import argparse
>     ImportError: No module named argparse
>
>     Similar from an installer:
>
>     [guenter at msm68
>     phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6]$
>     ./install --prefix=/home/software/PHENIX/1.14.3405/
>     Traceback (most recent call last):
>       File "./bin/install.py", line 20, in <module>
>         from libtbx.auto_build import install_distribution
>       File
>     "/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
>     line 75, in <module>
>         from libtbx.auto_build import install_base_packages
>       File
>     "/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_base_packages.py",
>     line 28, in <module>
>         from .package_defs import *
>       File
>     "/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/package_defs.py",
>     line 18, in <module>
>         from .bootstrap import Toolbox
>       File
>     "/home/software/PHENIX/1.14.3405/phenix-installer-dev-3405-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/bootstrap.py",
>     line 14, in <module>
>         import argparse
>     ImportError: No module named argparse
>
>
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