[phenixbb] Real space refinement with helical symmetry
pafonine at lbl.gov
Sat Jun 29 14:50:17 PDT 2019
> I am trying to do a real space refinement with phenix and my map is a
> filament and I have monomer model and I would like to refine against
> my filament map. I am wondering how to impose the helical symmetry in
> this case? (I have a pseudo filament model by copying multiple
> subunits and aligned in Chimera using "fit in map").
If you start with the model that possesses correct symmetry and just run
phenix.real_space_refine (command line or GUI) and make sure to disable
refinement of the NCS operators (by using refine_ncs_operators=False;
available command line or GUI), then that should just work.
Let us know if it doesn't do what you want!
More information about the phenixbb