[phenixbb] running phenix.validation from command line

[Roberto Marabini]

Hi Pavel,

   Did you find time to modify phenix.validation_cryoem ?

   thanks for the help

     Roberto

On Wed, Mar 6, 2019 at 3:47 PM Pavel Afonine <pafonine at lbl.gov> wrote:

> Hi Roberto,
>
> I don't think we have it. I will double-check now. If we don't have it I
> will add it today so that it's available in tomorrow's build.
>
> Pavel
>
> On 3/6/19 06:25, Roberto Marabini wrote:
> > Hi,
> >
> >    I see that it is possible to  execute phenix.validation from
> > command line by typing:
> >
> >   phenix.validation_cryoem <path to>/5ni1.cif <path to>/molprobity.mrc
> > resolution=2.2
> >
> > The program runs smoothly and prints on  screen a few hundreds of lines.
> > The more or less equivalent program in version 1.13 was
> > phenix.molprobity, when executed with the option pickle=True,
> > phenix.molprobity saved to the hard-disk a pkl file containing all data.
> >
> > Is there an equivalent flag for phenix.validation_cryoem? where is the
> > result of executing this shell being saved?
> >
> >    thanks
> >
> >   Roberto
>
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