[phenixbb] completeness issue

Pavel Afonine pafonine at lbl.gov
Tue Mar 12 11:47:49 PDT 2019


Can you send the file to me off-list? I'll have a closer look once I 
have the file.
Pavel

On 3/11/19 16:10, yong zhou wrote:
>
> Hi,
>
>
> Recently I deposited a structure to PDB. However, I was told there is 
> a large difference between reported (77.89%) and calculated (88.36%) 
> values for data completeness.
>
> In order to confirm the information, I used the command 
> phenix.reflection_statistics and the result is as following.
>
> Resolution range: 31.6787 1.91132
>
> Completeness in resolution range: 0.783333
>
> Completeness with d_max=infinity: 0.783193
>
> Anomalous completeness in resolution range: 0.599544
>
> Bijvoet pairs: 15786
>
> Lone Bijvoet mates: 9291
>
> Mean anomalous difference: 0.0671
>
> Space group of the intensities: P 2 2 2
>
> Space group of the metric:P m m m
>
> Tolerance used in the determination of the
>
> lattice symmetry: 3 degrees
>
> Possible twin laws: None
>
> Completeness of 4-8-(GlcNAc)5/output4-8.sca:I(+),SIGI(+),I(-),SIGI(-):
>
> unused:- 31.6830 [0/9] 0.000
>
> bin1: 31.6830 -1.9113 [28083/29673] 0.946
>
> unused:1.9113 -[0/0]
>
> There are two completeness values 0.783 and 0.946.
>
> So which is the correct one?
>
> Look forward to the reply.
>
>
> Yong Zhou
>
>
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb
> Unsubscribe: phenixbb-leave at phenix-online.org

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20190312/899ade2d/attachment-0001.htm>


More information about the phenixbb mailing list