[phenixbb] Phenix 1.17-3644 installation problems

Billy Poon BKPoon at lbl.gov
Mon Oct 7 16:06:21 PDT 2019


Hi,

It looks like there was an issue rebuilding the documentation as well. In
the /home/hsxx/Downloads/phenix-installer-1.17-3644-intel-linux-2.6-x86_64-centos/base_tmp
directory, there should be 2 log files, binary.log and
install_finalize.log. Can you send those to me? You may have to send them
directly to my email address instead of the bulletin board. Thanks!

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org


On Mon, Oct 7, 2019 at 1:30 PM Hernando J Sosa <
hernando.sosa at einstein.yu.edu> wrote:

> Dear Phenix developers,
>
>  Trying to install Phenix in a Linux computer (OpenSuse Leap 15.1)I got
> the  error messages listed below. Any help to fix this problem(s) would be
> appreciated.
>
> Thks.
>
> H.
>
> Precompiling .py files...
> Generating SOLVE/RESOLVE license file...
> Rebuilding HTML documentation...
> Error rebuilding documentation!
> Creating rotamer/Ramachandran database files...
> Traceback (most recent call last):
>   File "./bin/install.py", line 244, in <module>
>     installer(sys.argv[1:]).install()
>   File
> "/home/hsxx/Downloads/phenix-installer-1.17-3644-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
> line 201, in install
>     self.install_finalize()
>   File
> "/home/hsxx/Downloads/phenix-installer-1.17-3644-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py",
> line 542, in install_finalize
>     self.product_specific_finalize_install(log)
>   File "./bin/install.py", line 130, in product_specific_finalize_install
>     call([os.path.join(self.build_dir, 'bin',
> 'mmtbx.rebuild_rotarama_cache')], log=log)
>   File
> "/home/hsxx/Downloads/phenix-installer-1.17-3644-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/installer_utils.py",
> line 53, in call
>     raise RuntimeError("Call to '%s' failed with exit code %d" % (args,
> rc))
> RuntimeError: Call to
> '/home/hsxx/Programs/Phenix/phenix-1.17-3644/build/bin/mmtbx.rebuild_rotarama_cache'
> failed with exit code -4
>
>
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