[phenixbb] How to compare between electron density maps?

Pavel Afonine pafonine at lbl.gov
Mon May 11 21:19:57 PDT 2020

phenix.match_maps can overlay model B and map B onto model A and map A. 
A and B can be any symmetry and box (unit cell) dimensions. Model A and 
map A stay in its original frame of reference. Let me know should you 
have questions.


On 5/11/20 15:18, Murpholino Peligro wrote:
> I want to compare electron density features of map A from protein A 
> and map B from protein B...
> Because each map has a different rmsd level...
> ...what is the best way to compare electron density between maps?
> Is there a way to normalize maps or something like that?
> Thanks
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