[phenixbb] Refinement problem in phenix

[Pavel Afonine]

Hi,

please define "refinement still not working". I think phenix.refine wont 
accept UNX because it has undefined scattering type.

Pavel

On 5/22/20 13:41, Nigel Moriarty wrote:
> Muhammad
>
> There is an option in refinement that will determine the ion that best 
> fits a density blob. You should try that after removing the UNX.
>
> Cheers
>
> Nigel
>
> ---
> Nigel W. Moriarty
> Building 33R0349, Molecular Biophysics and Integrated Bioimaging
> Lawrence Berkeley National Laboratory
> Berkeley, CA 94720-8235
> Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
> Fax   : 510-486-5909       Web  : CCI.LBL.gov <http://CCI.LBL.gov>
>
>
> On Fri, May 22, 2020 at 1:27 PM Muhammad Bashir Khan <mbk at ualberta.ca 
> <mailto:mbk at ualberta.ca>> wrote:
>
>     Hi there;
>
>     I find some unknown density in my map, where I put SO4 and in some
>     UNX. I merged and save all in one PDB. I run ReadySet to make cif.
>     file, but refinement still not working. Can anybody explain what
>     else I should provide?
>
>     Thanks in advance
>
>     Bashir
>
>     -- 
>     ------------------------------------------------------
>     Muhammad Bashir Khan, Ph.D.
>     Research Associate
>     Department of Biochemistry
>     Medical Science Bldg.
>     Lab 3-27
>     University of Alberta
>     Edmonton AB, T6G 2H7
>
>     Phone: 780-492-4577-
>     e-mail: mbk at ualberta.ca <mailto:cbrooks1 at ualberta.ca>
>     _______________________________________________
>     phenixbb mailing list
>     phenixbb at phenix-online.org <mailto:phenixbb at phenix-online.org>
>     http://phenix-online.org/mailman/listinfo/phenixbb
>     Unsubscribe: phenixbb-leave at phenix-online.org
>     <mailto:phenixbb-leave at phenix-online.org>
>
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb
> Unsubscribe: phenixbb-leave at phenix-online.org

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20200522/6df99a8f/attachment.htm>