[phenixbb] phenix.polder how to select atoms by _struct_asym.id
osobolev at lbl.gov
Wed Feb 10 11:11:11 PST 2021
_struct_asym.id is linked with _atom_site.label_asym_id (
In Phenix it becomes chain id, therefore the selection should look like
"chain A" (use your _struct_asym.id instead of "A").
Let us know if this doesn't work.
On Wed, Feb 10, 2021 at 9:17 AM Pavel Afonine <pafonine at lbl.gov> wrote:
> Hi Agnieszka,
> currently the only way to make atom selections is to use Phenix atom
> selection syntax. To learn about atom selection syntax please refer to
> the following resources:
> On 2/10/21 05:18, Agnieszka Kiliszek wrote:
> > Hi everyone,
> > I would like to generate polder maps in phenix of selected ligand
> > molecules using mmCIF files. For me, the most convenient way of
> > selecting atoms of ligand was to use "_struct_asym.id". Therefore I
> > tried syntax selection segid but I received error "no atoms selected".
> > In pymol similar syntax "segi" works for the same mmCIF file.
> > What can be the reason of the error? Is it a way to select atoms of
> > ligand using "_struct_asym.id" in phenix.polder?
> > Best regards,
> > Agnieszka
> > _______________________________________________
> > phenixbb mailing list
> > phenixbb at phenix-online.org
> > http://phenix-online.org/mailman/listinfo/phenixbb
> > Unsubscribe: phenixbb-leave at phenix-online.org
> phenixbb mailing list
> phenixbb at phenix-online.org
> Unsubscribe: phenixbb-leave at phenix-online.org
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the phenixbb