[phenixbb] Error at fix_insertions_deletions

Carlos HENRIQUE FERNANDES carlos.henrique_fernandes at sorbonne-universite.fr
Mon May 3 09:19:47 PDT 2021


Hello all! 
I'am facing a problem running the phenix.fix_insertions_deletions. 
I'am using in the command line: phenix.fix_insertions_deletions sharpened_map.ccp4 resolution=3.5 protein.pdb seq.dat 
I've been encountering this error: 
File "/usr/local/phenix-1.19.2-4158/build/../modules/phenix/phenix/command_line/fix_insertions_deletions.py", line 7, in <module> 
run_program(program_class=fix_insertions_deletions.Program) 
File "/usr/local/phenix-1.19.2-4158/modules/cctbx_project/iotbx/cli_parser.py", line 72, in run_program 
task.run() 
File "/usr/local/phenix-1.19.2-4158/modules/phenix/phenix/programs/fix_insertions_deletions.py", line 515, in run 
self.fix_insertions_deletions.run() 
File "/usr/local/phenix-1.19.2-4158/modules/phenix/phenix/autosol/fix_insertions_deletions.py", line 1331, in run 
self.run_macro_cycles() 
File "/usr/local/phenix-1.19.2-4158/modules/phenix/phenix/autosol/fix_insertions_deletions.py", line 1464, in run_macro_cycles 
self.run_cycles(mc=mc) 
File "/usr/local/phenix-1.19.2-4158/modules/phenix/phenix/autosol/fix_insertions_deletions.py", line 1485, in run_cycles 
self.overall_rebuild_worst_residues(icycle,mc=mc) 
File "/usr/local/phenix-1.19.2-4158/modules/phenix/phenix/autosol/fix_insertions_deletions.py", line 1528, in overall_rebuild_worst_residues 
mc=mc) 
File "/usr/local/phenix-1.19.2-4158/modules/phenix/phenix/autosol/fix_insertions_deletions.py", line 1027, in rebuild_worst_residues 
map_coeffs=map_coeffs) 
File "/usr/local/phenix-1.19.2-4158/modules/phenix/phenix/autosol/fix_insertions_deletions.py", line 589, in rebuild_one_loop 
end_rebuild=end_rebuild,) 
UnboundLocalError: local variable 'new_model' referenced before assignment 

Has anyone encountered this error before? 
Thanks in advance, 
Carlos Fernandes 







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