[phenixbb] Fwd: [SRCC #47733] Fwd: Phenix GUI showing unreadable squares

[Billy Poon]

Hi Dong-Hua,

Sorry for the late reply, this looks like a font-config issue. Can you
print out your environment variables with "printenv" from a terminal? We
ship our own GUI dependencies, but there may be an environment variable
that is overriding our settings.

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Fax: (510) 486-5909
Web: https://phenix-online.org


On Thu, May 13, 2021 at 1:39 PM Dong-Hua Chen <donghua.chen at gmail.com>
wrote:

> Hi All,
>
> I asked Stanford cluster admin and he is questioning the CentOS version
> incompatibilities (see the following). Any suggestions?
>
> Thanks
> Dong-Hua
>
>
>
> ---------- Forwarded message ---------
> From: Kilian Cavalotti <srcc-support at stanford.edu>
> Date: Thu, May 13, 2021 at 12:20 PM
> Subject: Re: [SRCC #47733] Fwd: [phenixbb] Phenix GUI showing unreadable
> squares
> To: <donghua.chen at gmail.com>
>
>
> Hi Dong-Hua,
>
> It looks like the software is built for CentOS 6.10, while Sherlock is
> running CentOS 7.x, so incompatibilities are likely.
> Is there a way to rebuild it from source. maybe?
>
> Cheers,
> --
> *Kilian Cavalotti*
> Stanford Research Computing Center
> *Sherlock // *web <https://www.sherlock.stanford.edu> | docs
> <https://www.sherlock.stanford.edu/docs> | status
> <https://status.sherlock.stanford.edu> | news
> <https://news.sherlock.stanford.edu>47733:1231609
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